zavolanlab / zarp-cli

A user-friendly command-line interface for the ZARP RNA-seq analysis workflow
https://zavolanlab.github.io/zarp-cli/
Apache License 2.0
5 stars 1 forks source link

feat: pass Snakemake profile to ZARP workflow #77

Closed uniqueg closed 1 year ago

uniqueg commented 1 year ago

Fixes #59

Type of change

Checklist

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (102cdd4) 100.00% compared to head (8b02e6b) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #77 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 23 23 Lines 1256 1261 +5 ========================================= + Hits 1256 1261 +5 ``` | [Files Changed](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/77?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab) | Coverage Δ | | |---|---|---| | [zarp/config/args.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/77?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC9jb25maWcvYXJncy5weQ==) | `100.00% <100.00%> (ø)` | | | [zarp/config/models.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/77?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC9jb25maWcvbW9kZWxzLnB5) | `100.00% <100.00%> (ø)` | | | [zarp/snakemake/run.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/77?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC9zbmFrZW1ha2UvcnVuLnB5) | `100.00% <100.00%> (ø)` | | | [zarp/version.py](https://app.codecov.io/gh/zavolanlab/zarp-cli/pull/77?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=zavolanlab#diff-emFycC92ZXJzaW9uLnB5) | `100.00% <100.00%> (ø)` | |

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