zavolanlab / zarp-cli

A user-friendly command-line interface for the ZARP RNA-seq analysis workflow
https://zavolanlab.github.io/zarp-cli/
Apache License 2.0
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fix: mount TMP directories for Singularity #79

Closed ninsch3000 closed 9 months ago

ninsch3000 commented 9 months ago

Error was raised in htsinfer, as tmp directory could not be created.

Mounting the os tmp dir in the corresponding singularity container fixed this

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codecov[bot] commented 9 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (d9503aa) 100.00% compared to head (a61548b) 100.00%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #79 +/- ## ========================================= Coverage 100.00% 100.00% ========================================= Files 23 23 Lines 1261 1263 +2 ========================================= + Hits 1261 1263 +2 ```

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