fix: propagate HTSinfer inferences

The updated sample table generated by the HTSinfer pipeline was never read to update the internal sample processor object.

Please delete options that are not relevant.

Please carefully read these items and tick them off if the statements are true or do not apply.

[x] I have performed a self-review of my own code
[x] My code follows the existing coding style, lints and generates no new warnings
[x] I have added type annotations to all function/method signatures, and I have added type annotations for any local variables that are non-trivial, potentially ambiguous or might otherwise benefit from explicit typing.
[x] I have commented my code in hard-to-understand areas
[x] I have added Google-style docstrings to all new modules, classes, methods/functions or updated previously existing ones
[x] I have added tests that prove my fix is effective or that my feature works
[x] New and existing unit tests pass locally with my changes and I have not reduced the code coverage relative to the previous state
[x] I have updated any sections of the app's documentation that are affected by the proposed changes

zavolanlab / zarp-cli