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UniProt, Rhea, Swiss-Lipids and HAMAP and from huge to tiny. Practical SPARQL in the life sciences #22

Open JervenBolleman opened 5 months ago

JervenBolleman commented 5 months ago

Talk Title

UniProt, Rhea, Swiss-Lipids and HAMAP and from huge to tiny. Practical SPARQL in the life sciences

Session Overview

UniProt is the largest public SPARQL endpoint at nearly 150 billion triples (probably more on the date of the talk). It is however not the only one maintained by the SIB Swiss-Prot group. Rhea brings the world of chemical reactions to UniProt, Swiss-Lipids is used to describe the world of fat ;) and how these molecules are key to life. While [HAMAP]() is a more internal project, yet exposing a SPARQL endpoint is quite useful.

We would like to share some of the technical challenges we have overcome and how we and our external users use these systems in connection with the larger SIB RDF landscape as well as other datasources like the Gene Ontology.

Target Audience

People whom like to be inspired about what is possible when your data is really FAIR.

Desired Feedback

Which use cases we are not meeting yet for those in Pharma space. Tools and practices that would improve our services.

Speaker Details

Jerven Bolleman: Swiss Institute of Bioinformatics. Maintaining the public face of the RDF of UniProt with the help of a talented team at SIB.

Recording Consent

YES

Workshop Potential

NO

Visual Aid for Social Media

ktk commented 4 months ago

Thanks for the proposal! I'm finalizing the schedule in the following 1-2 weeks, looks like we are pretty much full already.

ktk commented 3 months ago

Thanks for the contribution! Your session is accepted, looking forward to see you!