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zcang / COMMOT

MIT License
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COMMOT in Seurat object #30

Open nsdelablancac opened 5 months ago

nsdelablancac commented 5 months ago

Hi all!

I'd like to use COMMOT in my already processed Seurat data. To this aim, I transformed the Seurat object into AnnData as specified here: https://mojaveazure.github.io/seurat-disk/articles/convert-anndata.html. However, this transformed object has some compatibility problems in Python: Spatial not detected, genes specified differently and not detected...

Is it possible to use COMMOT in my Seurat object to avoid these issues?

Thank you in advance! Best.