Docker Version

[jerryyyyy]

Have been trying to use the docker version with:

docker build -t telseq-docker github.com/zd1/telseq

But getting errors on W10 docker:

Unable to build context: Unable to find 'git': exec: "git": executable file not found in "%PATH%

Suggestions appreciated.

[zd1]

Looks like git hasn't been installed? Would you be able to find the executable by command "which git" ?

Alternatively, just download the "Dockerfile" in the repo https://github.com/zd1/telseq/blob/master/Dockerfile

and then build docker image by running against the downloaded file as below (replace the path with the downloaded path)

docker build -t telseq-docker /path/to/my/downloaded/Dockerfile

[jerryyyyy]

I am new to docker and installed it in Windows, so I am running in the command screen of a Windows installation of docker.

The prompt is for a Windows system, e.g C:\WINDOWS\system32

which get is not recognized.

Looks like I have to install a Linux version of docker in my linux VM?

Starting down that road.

[jerryyyyy]

Good news I got it installed in my Ubuntu Virtual Machine and it runs... Of course then it no longer sees the genetics files mounted in Windows. Apparently I have to update the VMware Tools.... not a piece of cake.

[jerryyyyy]

This VMware problem looks like a mess:

https://stackoverflow.com/questions/39858200/vmware-workstation-and-device-credential-guard-are-not-compatible

All stopped working after the latest set on W10 updates.... If you do not have Hyper-V, no files shared, it appears. But with Hyper-V VMware does not start correctly.

I better try to put it on a real Linux box. This is not easy as all the Linux boxes we have are locked down carefully for security reasons. I was trying to do this data analysis on an isolated system.

[jerryyyyy]

Reopening, not clear about this commenting system.