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zdk123 / SpiecEasi

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
GNU General Public License v3.0
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Running more than 2 matrices #269

Open susheelbhanu opened 3 months ago

susheelbhanu commented 3 months ago

Hi,

I'm wondering if I can run SE with more than 2 matrices. For example, if I had 16s, 18s and ITS sequences.

Would this be possible? And do I simply provide a list for the input?

Could you please give an example if possible?

Thank you, Susheel

zdk123 commented 3 months ago

See the README https://github.com/zdk123/SpiecEasi#cross-domain-interactions

On Sun, Aug 18, 2024, 3:36 AM Susheel Bhanu Busi @.***> wrote:

Hi,

I'm wondering if I can run SE with more than 2 matrices. For example, if I had 16s, 18s and ITS sequences.

Would this be possible? And do I simply provide a list for the input?

Could you please give an example if possible?

Thank you, Susheel

— Reply to this email directly, view it on GitHub https://github.com/zdk123/SpiecEasi/issues/269, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAUD2RD4FTHQVLCUX44OKSLZSBFIXAVCNFSM6AAAAABMWD5OO2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGQ3TCOBTHEYTQNA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

susheelbhanu commented 3 months ago

Thanks @zdk123. I've used that set of code before but wasn't sure if it could handle more than two datasets. Seems like it can so thanks for confirming. 🙏

zdk123 commented 3 months ago

Oh yes sorry for the confusion. You can pass in any number of like datasets.

On Sun, Aug 18, 2024, 2:34 PM Susheel Bhanu Busi @.***> wrote:

Thanks @zdk123 https://github.com/zdk123. I've used that set of code before but wasn't sure if it could handle more than two datasets. Seems like it can so thanks for confirming. 🙏

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susheelbhanu commented 3 months ago

Great, thank you very much!