Question about multi.spiec.easi

zdk123 / SpiecEasi

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

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Question about multi.spiec.easi #273

Open AnnaClo opened 1 month ago

AnnaClo commented 1 month ago

Hi, I have a dataset for multiple organisms, so I'm considering to use multi.spiec.easi. Does this function calculate edges only within each group of organisms or also between groups? My goal would be to have each group clr-transformed independently and then obtain edges within and between groups of organisms. Is this possible within multi.spiec.easi / spiec.easi?

zdk123 commented 1 month ago

yes, all pairwise interactions between and within groups.