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zeeev / mergeSVcallers

heuristics to merge structural variant calls in VCF format.
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How to set the -s parameter? #3

Open xiagjt opened 8 years ago

xiagjt commented 8 years ago

What is the difference betwen -s 100 and -s 500 ? I do not know the parameter -s. Thank you!

zeeev commented 8 years ago

-s requires that both the start and end of two SV be no more than S base pairs apart.

At -s 100 if the two start positions are at 1000 and 1200 the two SVs will not be merged.

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On Sep 4, 2016, at 7:25 AM, xiagjt notifications@github.com wrote:

What is the difference betwen -s 100 and -s 500 ? I do not know the parameter -s. Thank you!

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xiagjt commented 8 years ago

thank you !