Closed y1025i closed 3 years ago
Hi,
I'm trying to intall mergeSVcallers with:
git clone --recursive https://github.com/zeeev/mergeSVcallers.git cd mergeSVcallers make but I got the error:
g++ -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -O3 -Wall -DVERSION=\"2353-dirty\" -c -o smithwaterman/IndelAllele.o smithwaterman/IndelAllele.cpp gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /lustre/zhangy/software/miniconda2/include -std=c++0x -O3 -Wall -DVERSION=\"2353-dirty\" -c -o src/ssw.o src/ssw.c gcc: error: unrecognized command line option ‘-fno-plt’ make[1]: [: src/ssw.o] Error 1 make[1]: Leaving directory '/lustre/zhangy/software/mergeSVcallers/vcflib' make: [Makefile:20: buildVCFlib] Error 2
how should i do next
Hi,
I'm trying to intall mergeSVcallers with:
git clone --recursive https://github.com/zeeev/mergeSVcallers.git cd mergeSVcallers make but I got the error:
g++ -O3 -D_FILE_OFFSET_BITS=64 -std=c++0x -O3 -Wall -DVERSION=\"2353-dirty\" -c -o smithwaterman/IndelAllele.o smithwaterman/IndelAllele.cpp gcc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /lustre/zhangy/software/miniconda2/include -std=c++0x -O3 -Wall -DVERSION=\"2353-dirty\" -c -o src/ssw.o src/ssw.c gcc: error: unrecognized command line option ‘-fno-plt’ make[1]: [: src/ssw.o] Error 1
make[1]: Leaving directory '/lustre/zhangy/software/mergeSVcallers/vcflib'
make: [Makefile:20: buildVCFlib] Error 2
how should i do next