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zeeev / wham

Structural variant detection and association testing
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About -e $EXCLUDE #42

Closed xie186 closed 7 years ago

xie186 commented 7 years ago

Could you please give me a short description of -e ?

I'm a little bit of confused. In the help message:

  *|-e    -c  <STRING>  Comma sep. list of seqids to keep [false].

This means the chrom ID given to -e should be INCLUDEd. But here in the README. you say -e $EXCLUDE. Which one is correct? Thanks.

zeeev commented 7 years ago

For exclusion use -e and for inclusion use -c.

e.g.

-e chrMT,chrY

xie186 commented 7 years ago

Got it. Thanks.