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zeeev / wham

Structural variant detection and association testing
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Genotyping #45

Closed woodoo46 closed 6 years ago

woodoo46 commented 6 years ago

Hi,

Just a quick question, wham does not provide genotyping step itself? We need to use another program to genotype wham's result?

Thanks.

George

zeeev commented 6 years ago

Hello,

Yes, I'd recommend SVTyper for WhamG calls.

woodoo46 commented 6 years ago

Thanks!