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zeeev / wham

Structural variant detection and association testing
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WHAM-BAM finished normally #53

Closed liufy11 closed 4 years ago

liufy11 commented 4 years ago

the runing break suddenly and says "WHAM-BAM finished normally" there is no result . I mapped my read to reference with bowtie2 ,Does that matter?

zeeev commented 4 years ago

Yes you need to use bwa-mem.

On Fri, Jan 3, 2020 at 5:56 AM liufy11 notifications@github.com wrote:

the runing break suddenly and says "WHAM-BAM finished normally" there is no result . I mapped my read to reference with bowtie2 ,Does that matter?

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liufy11 commented 4 years ago

Thanks for your quick reply !