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zellerlab / GECCO

GEne Cluster prediction with COnditional random fields.
https://gecco.embl.de
GNU General Public License v3.0
54 stars 7 forks source link

GECCO is not compatible with Python 3.10 #7

Closed apcamargo closed 2 years ago

apcamargo commented 2 years ago

GECCO can't be installed in a Python 3.10 environment. This is actually caused because python-crfsuite won't build in Python 3.10, so I'm not really sure if there's an option other than waiting for an upstream fix or changing the CRF backend.

althonos commented 2 years ago

Hi Antônio, as you pointed out this is a bug with python-crfsuite so at the moment there's not much we can do about it until they publish a fix. You can however get a working version by installing directly from the master branch of python-crfsuite, which has been fixed:

$ pip install -U git+https://github.com/scrapinghub/python-crfsuite.git
apcamargo commented 2 years ago

Apparently this is not a problem anymore :)

althonos commented 2 years ago

Perfect ! :smile: