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zellerlab / siamcat

R package for Statistical Inference of Associations between Microbial Communities And host phenoType
https://siamcat.embl.de/
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Build model using only metadata features #16

Closed andrewmaltezthomas closed 3 years ago

andrewmaltezthomas commented 4 years ago

Hi Jakob and siamcat devs,

Thanks for creating such a nice and useful tool for the scientific community!

I was wondering if you had any tips on how to train and test models in siamcat using only metadata features (no microbiome features)?

Thanks

andrewmaltezthomas commented 3 years ago

I managed to run models with metadata alone, by adding them and then filtering out species abundances.