Closed fernando-aq closed 1 year ago
Hi @fernando-aq
It depends on how you sort the table. By default, the features will be sorted by generalized fold change, so the N features with the largest absolute fold change will be chosen (if you have more than max.show
significant features).
You can also just extract the association results using
associations(sc.obj)
and then investigate the whole table with other R functions that you like
Cheers,
Jakob
Hi, I am wondering how the top N features are selected in your association.plot(max.show = N) function?
Is it based on absolute fold change? or any other parameters?