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zentnerlab
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TSRexploreR
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Error: unable to find an inherited method for function ‘NSBS’ for signature ‘"SortedByQueryHits"’
#204
aboyd003
closed
1 year ago
0
TSS shift calculation sets shift_score_FDR=1
#203
krbe9202
opened
1 year ago
0
`mark_dominant()` deletes `normalized_score` in `experiment@counts$TSSs$raw[sample]`
#202
perinom
opened
2 years ago
0
lfc_shrink not working in differential_expression
#201
perinom
closed
2 years ago
1
typo in merge_samples()?
#200
perinom
opened
2 years ago
3
tss_export() normalization
#199
gzentner
opened
2 years ago
0
tss_export() fail
#198
perinom
opened
2 years ago
2
Bug fixes.
#197
rpolicastro
closed
3 years ago
0
plot_correlation using raw scores
#196
mstampar
opened
3 years ago
0
threshold_apply using normalized counts
#195
mstampar
opened
3 years ago
0
object 'min_count' not found in plot_threshold_exploration()
#194
perinom
closed
2 years ago
3
Normalization issues with data imported from bam files
#193
perinom
opened
3 years ago
4
Installation fail from github
#192
perinom
closed
3 years ago
0
Fix typo
#191
t-arae
closed
3 years ago
1
rendering documentation for tss_shift and rebuilding site
#190
rpolicastro
closed
3 years ago
0
Updating EMD documentation
#189
gzentner
closed
3 years ago
0
updating singularity recipe to fix ChIPseeker error
#188
rpolicastro
closed
3 years ago
0
Updating tss_shift documentation
#187
rpolicastro
closed
3 years ago
0
updating pkgdown site
#186
rpolicastro
closed
3 years ago
0
fixing bugs in tss_shift
#185
rpolicastro
closed
3 years ago
0
updated tss shifting plotting functions to accommodate EMD
#184
rpolicastro
closed
3 years ago
0
changing column order of shifting score results
#183
rpolicastro
closed
3 years ago
0
redocumenting shifting score changes
#182
rpolicastro
closed
3 years ago
0
hopefully fix prob summation error
#181
dajmcdon
closed
3 years ago
0
tss_shifting update to accommodate EMD
#180
rpolicastro
closed
3 years ago
0
Emd version
#179
dajmcdon
closed
3 years ago
2
updating shift-score code
#178
rpolicastro
closed
3 years ago
0
add a test for the big shift score wrapper, fix bug in the last fhash
#177
dajmcdon
closed
3 years ago
0
added differential heatmap
#176
rpolicastro
closed
3 years ago
0
Add pos/negative components to shift scores
#175
dajmcdon
closed
3 years ago
0
pkgdown site, and various fixes
#174
rpolicastro
closed
3 years ago
0
removing erroneous hidden files
#173
rpolicastro
closed
3 years ago
0
Addressing some reviewer comments
#172
rpolicastro
closed
3 years ago
0
Documentation updates
#171
gzentner
closed
3 years ago
0
Removing unecssary C++ files, and improving github README.
#170
rpolicastro
closed
3 years ago
0
integrating Dan's changes to cpp code
#169
rpolicastro
closed
3 years ago
0
Updating singularity container and R environment
#168
rpolicastro
closed
3 years ago
0
adding threshold to TSR correlation in standard analysis vignette
#167
gzentner
closed
3 years ago
0
adding back thresholding for tsr correlation
#166
rpolicastro
closed
3 years ago
0
some changes to improve installation
#165
rpolicastro
closed
3 years ago
0
internal function documentation and example checks
#164
rpolicastro
closed
3 years ago
0
Adding references to vignettes
#163
gzentner
closed
3 years ago
0
fixing plot_heatmap bug
#162
rpolicastro
closed
3 years ago
0
fixing errors in examples, and rendering roxygen documentation
#161
rpolicastro
closed
3 years ago
0
Roxygen documentation updates
#160
gzentner
closed
3 years ago
0
adding TSSs_reduced to repo; removing github dir
#159
rpolicastro
closed
3 years ago
0
Updating vignettes
#158
gzentner
closed
3 years ago
0
fixed typo in data conditioning vignette header
#157
rpolicastro
closed
3 years ago
0
Correcting data conditioning vignette index
#156
gzentner
closed
3 years ago
1
properly formatting data conditioning vignette for package
#155
rpolicastro
closed
3 years ago
0
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