Open Yijiankai opened 3 years ago
Hi, Could you provide the code on how to convert the original GEO data to 2 DNA sequencing + 2 RNA sequencing files to directly apply your scripts here ? Thanks.
Hi, I uploaded gz files of the fastq sequencing data to the repository. Are you talking about how to convert the files you downloaded (sorry, I have no idea about the file format you have atm) to fastq files?
Where are your uploaded fastq gz files? Yes, I am asking how to convert the downloaded files to fastq files since DNA and RNA sequencing are stored in one file. How I can separate them?
Where are your uploaded fastq gz files? Yes, I am asking how to convert the downloaded files to fastq files since DNA and RNA sequencing are stored in one file. How I can separate them?
I guess you should follow the guide from SRA (SRA Toolkit) first. Then SplitDNARNAMergedFile.py was used to separate DNA and RNA sequencing data from one file
Hi, Could you provide the code on how to convert the original GEO data to 2 DNA sequencing + 2 RNA sequencing files to directly apply your scripts here ? Thanks.