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zh3zh / CODA

This is the method CODA(covariation-induced deviation of activity) introduced in the paper "Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity".
MIT License
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fastq #3

Open Yijiankai opened 3 years ago

Yijiankai commented 3 years ago

Hi,

I used fastq-dump to get fastq_1 and fastq_2 from the download file and your script to separate fastq files. But there are some thing wrong with transformed fastq files. The separated DNA and RNA files lost lots of information from them. Could you provide a link to directly download the correct fastq files? Thx.

zh3zh commented 3 years ago

Hi,

I used fastq-dump to get fastq_1 and fastq_2 from the download file and your script to separate fastq files. But there are some thing wrong with transformed fastq files. The separated DNA and RNA files lost lots of information from them. Could you provide a link to directly download the correct fastq files? Thx.

Sorry for the late reply, I was quite busy last week. I will check the conversion of the fastq files later. And regarding the network issues, which methods can you accept for downloading the files?

Yijiankai commented 3 years ago

That is great! Could you provide the MEGA share link?

Yijiankai commented 3 years ago

Hi, any response?

zh3zh commented 3 years ago

Hi, any response?

Hi, please contact the corresponding author Yaoqi Zhou. I will share the mega link as soon as I get his approval.