Pathfinder run with jug stalls at certain locations when running through a job

zhafen / linefinder

A tool for finding and classifying the worldlines of Lagrangian parcels of mass, in the context of hydrodynamic simulations of galaxy formation.

https://zhafen.github.io/linefinder

MIT License

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Closed zhafen closed 6 years ago

zhafen commented 6 years ago

Originally reported by Zachary Hafen (Bitbucket: zhafen, GitHub: zhafen)

This seems to be an issue with jug.barrier().

zhafen commented 6 years ago

Original comment by Zachary Hafen (Bitbucket: zhafen, GitHub: zhafen)

Workaround implemented.

zhafen commented 6 years ago

Original comment by Zachary Hafen (Bitbucket: zhafen, GitHub: zhafen)

This is a bug in jug, but the following workaround works, and has been implemented in my pipeline:

while ! jug check $JUGFILE; do
   jug sleep-until $JUGFILE 
done

zhafen commented 6 years ago

Original comment by Zachary Hafen (Bitbucket: zhafen, GitHub: zhafen)

I should approach this by making a mock test problem first.