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zhangfanmark / DeepWMA

Deep White Matter Analysis
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where is the `groundTruthLabel` stored after the UKF? is it created while the UKF is performed? #4

Open anoushkrit opened 2 years ago

anoushkrit commented 2 years ago

When in _label.h5 creation, it requires groundTruthLabel as an argument to dlt_extract_tract_feat.py . I am facing trouble in finding how to create GroundTruthLabel, even after subject_specific_parcellation and anatomical tractography, I am not able to find a way to connect these dots. The main question bothering me while understanding pnlbwh and SlicerDMRI pipeline is - how the labels are generated which are then fed into any model, be it CNN based DeepWMA or pointNet SupWMA. If there is a script which does the same, that would be really helpful in understanding the ecosystem your group has created

gaunny commented 1 year ago

When in _label.h5 creation, it requires groundTruthLabel as an argument to dlt_extract_tract_feat.py . I am facing trouble in finding how to create GroundTruthLabel, even after subject_specific_parcellation and anatomical tractography, I am not able to find a way to connect these dots. The main question bothering me while understanding pnlbwh and SlicerDMRI pipeline is - how the labels are generated which are then fed into any model, be it CNN based DeepWMA or pointNet SupWMA. If there is a script which does the same, that would be really helpful in understanding the ecosystem your group has created

hi! Have you solved your problem? I have the same problem as you and I want the groundtruth labels. :)