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zhanghaicang / carbonmatrix_public

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No such file or directory: ../new_rigid_schema.json #1

Closed asamadi22 closed 5 months ago

asamadi22 commented 5 months ago

I am receiving an error of 'No such file or directory...' relating to the 'new_rigid_schema.json' file. I'm not sure if this is supposed to be included in the repo or if it's something that should be generated based on the PDB. The full error: 

Traceback (most recent call last):
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/run_carbondesign.py", line 15, in <module>
    from carbondesign.data.pdbio import save_pdb
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/data/pdbio.py", line 14, in <module>
    from carbondesign.common import residue_constants
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/common/residue_constants.py", line 201, in <module>
    rigid_group_atom_positions = load_rigid_schema()
                                 ^^^^^^^^^^^^^^^^^^^
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/common/residue_constants.py", line 198, in load_rigid_schema
    with open(new_schema_path) as f:
         ^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/common/new_rigid_schema.json'
zhanghaicang commented 5 months ago

Thanks for your comments. We have uploaded the missing files and updated README. If you have any other questions, please let us know.

I am receiving an error of 'No such file or directory...' relating to the 'new_rigid_schema.json' file. I'm not sure if this is supposed to be included in the repo or if it's something that should be generated based on the PDB. The full error:

Traceback (most recent call last):
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/run_carbondesign.py", line 15, in <module>
    from carbondesign.data.pdbio import save_pdb
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/data/pdbio.py", line 14, in <module>
    from carbondesign.common import residue_constants
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/common/residue_constants.py", line 201, in <module>
    rigid_group_atom_positions = load_rigid_schema()
                                 ^^^^^^^^^^^^^^^^^^^
  File "/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/common/residue_constants.py", line 198, in load_rigid_schema
    with open(new_schema_path) as f:
         ^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/Users/ayasamadi/Desktop/carbonmatrix_public/carbondesign/common/new_rigid_schema.json'

Thanks for your comments. We have uploaded the missing files and updated README. If you have any other questions, please let us know.