Can we mask/fix a subset of residues such that the generated sequences are conditioned on the masked ones?

zhanghaicang / carbonmatrix_public

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Can we mask/fix a subset of residues such that the generated sequences are conditioned on the masked ones? #3

Open kevingeo11 opened 4 months ago

kevingeo11 commented 4 months ago

Great work! When you are loading the pdb data, I saw that you are creating a dummy sequence "GGG.....GG". Is it possible to load the original sequence and fix a few residues (say binding sites) and generate only the remaining ones?