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zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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Resolving 'subscript out of bounds' Error in PAGA Analysis #140

Open DaXuanGarden opened 1 year ago

DaXuanGarden commented 1 year ago

Hello there, I encountered an error while running PAGA analysis:

PAGA analysis

pancreas_sub <- RunPAGA( srt = scRNA, group_by = "celltype", linear_reduction = "PCA", nonlinear_reduction = "UMAP" ) Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 't': subscript out of bounds

How should I solve this error? Thank you very much for your reply.

zhanghao-njmu commented 1 year ago

Can you reinstall the latest SCP and try again? This issue may have been resolved in the latest version. If it still persists, please let me know.

DaXuanGarden commented 1 year ago

Ok🆗，Thanks!

---- Replied Message ---- | From | @.> | | Date | 09/01/2023 14:44 | | To | @.> | | Cc | @.>@.> | | Subject | Re: [zhanghao-njmu/SCP] Resolving 'subscript out of bounds' Error in PAGA Analysis (Issue #140) |

Can you reinstall the latest SCP and try again? This issue may have been resolved in the latest version. If it still persists, please let me know.

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