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zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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Hi! Disturb you! #141

Open Yuuuushan opened 1 year ago

Yuuuushan commented 1 year ago

RunSCVELO is too slow. About three hours using your provided data. How can I fix it?

zhanghao-njmu commented 1 year ago

While RunSCVELO by default utilizes a single thread, it should still provide acceptable speed. However, you can try accelerating velocity calculations by specifying the number of threads, such as n_jobs=10.