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zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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RunDEtest Error #145

Open nbutyrate opened 1 year ago

nbutyrate commented 1 year ago

Hi I am getting the following error, please help to fix it

DIS_sub <- RunDEtest(srt = DIS_n, group_by = "Cell_Type", fc.threshold = 1, only.pos = FALSE) [2023-08-20 16:44:07] Start DEtest Workers: 14 Error: ! The slot argument of Assays() was deprecated in SeuratObject 5.0.0 and is now defunct. ℹ Please use LayerData() instead.

zhanghao-njmu commented 1 year ago

The current version of SCP only supports Seurat versions below 5.0. Once Seurat 5.0 becomes stable, I will consider adding support for it. Therefore, for now, you have two options: either reinstall Seurat version 4.3 or lower, or use renv to create a separate environment with the required dependencies to run SCP.