zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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How many database can we chose in function 'FeatureHeatmap(db = )' #153

Open zhangdae opened 1 year ago

zhangdae commented 1 year ago

I want to use this command to finifsh function enrichment,using hallmark dataset,but whatever I write ,always report an error. I tried h/H/hallmark,always report thee error.

Error: BiocParallel errors 26 remote errors, element index: 1, 2, 3, 4, 5, 6, ... 0 unevaluated and other errors first remote error: Error in base::rowSums(x, na.rm = na.rm, dims = dims, ...): 'x' must be an array of at least two dimensions

zhangdae commented 1 year ago

The source code is tooo complicated to me,I can`t find how many database could be used in this command :-(, besides GO_BP/MF/CC,KEGG,wikipathway.

zhangdae commented 1 year ago

The code I attch can perfectly run when chosing db = GO_BP/MF/CC,KEGG,wikipathway

zhanghao-njmu commented 1 year ago

Apologies, the documentation for the SCP functions is still being written. To discover the available database names within the SCP package, please refer to the documentation of PrepareDB function.

zhangdae commented 1 year ago

Thanks for replying