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zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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AnnotateFeatures #156

Open 2959493126 opened 11 months ago

2959493126 commented 11 months ago

sce <- AnnotateFeatures(sce, species = "Mus_musculus", db = c("TF", "SP")), I want to know does this only support humans and mice? Does it work with non-model species?

zhanghao-njmu commented 11 months ago

You can download and build gene annotation databases for other species through the PrepareDB function. If a database supports the species, it will be constructed automatically. If it does not support the species, you can set convert_species = TRUE to build a gene annotation database after homologous gene conversion. These prepared databases can be used in other functions of SCP.

2959493126 commented 11 months ago

Thank you

在2023-09-04 @.***写道：

You can download and build gene annotation databases for other species through the PrepareDB function. If a database supports the species, it will be constructed automatically. If it does not support the species, you can set convert_species = TRUE to build a gene annotation database after homologous gene conversion. These prepared databases can be used in other functions of SCP.

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