Closed 1269376398 closed 11 months ago
same issue
same issue
I'm sorry, this error occurred because an incorrect database name was used. SCP changed the name of the SP database to CSPA in version 0.5 to differentiate it from another surface protein database called Surfaceome. However, the readme file was not updated to reflect this change, resulting in the error.
I have already updated the readme file. Please replace "SP" with "CSPA" in your current code.
Thanks for your reply. Thank you for your hard work
Thanks for your reply. Thank you for your hard work
data("pancreas_sub") DEGs <- pancreas_sub@tools$DEtest_CellType$AllMarkers_wilcox DEGs <- DEGs[with(DEGs, avg_log2FC > 1 & p_val_adj < 0.05), ] pancreas_sub <- AnnotateFeatures(pancreas_sub, species = "Mus_musculus", db = c("TF", "SP")) Species: Mus_musculus
Loading cached db: TF version:AnimalTFDB4 nterm:2 created:2023-09-07 10:54:23 Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate
I want to learn how to solve this?