Open realzwu opened 11 months ago
Certainly, you can.
Here, FeatureHeatmap will conduct enrichment analysis. If a local gene annotation database is not available, it will perform tasks such as online downloading of the database and online gene ID conversion via Ensembl.
I suggest using PrepareDB to get the database ready first. If any issues occur while connecting to Ensembl, you might want to consider adjusting the Ensembl_version (default is 103, but can be switched to other versions) and the mirror parameter (choices include 'www', 'uswest', 'useast', 'asia').
Hi Hao,
I am facing problems right now when I implementing SCP on biotrainee.vip. When I ran FeatureHeatmap using demo dataset, an error was reported as follows:
The connection seems quite unstable, and I have not collected mart yet after serveral trials. I wonder if we can alter the mirror (or archive) for accessing the data? Or any other ways to solve the problem. Thank you!