install problem

[ywl506803062]

When I run renv::install("zhanghao-njmu/SCP", repos = BiocManager::repositories()), it shows:

renv::install("zhanghao-njmu/SCP", repos = BiocManager::repositories()) 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org

Downloading packages -------------------------------------------------------

• Downloading SCP from GitHub ... OK [37 Mb in 3.9s] Successfully downloaded 1 package in 14 seconds.

The following package(s) will be installed:

• SCP [zhanghao-njmu/SCP@main]
• treeio [GuangchuangYu/treeio@devel] These packages will be installed into "~/SCP_env/renv/library/R-4.2/x86_64-pc-linux-gnu".

Do you want to proceed? [Y/n]: Y

Installing packages --------------------------------------------------------

• Installing treeio ... OK [linked from cache]

• Installing SCP ... FAILED Error: Error installing package 'SCP':

Warning in untar2(tarfile, files, list, exdir, restore_times) : skipping pax global extended headers

• installing source package ‘SCP’ ... using staged installation libs g++ -std=gnu++11 -I"/opt/R/4.2.1/lib64/R/include" -DNDEBUG -I'/home/yangwl/SCP_env/renv/library/R-4.2/x86_64-pc-linux-gnu/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.2.1/lib64/R/include" -DNDEBUG -I'/home/yangwl/SCP_env/renv/library/R-4.2/x86_64-pc-linux-gnu/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c asMatrix.cpp -o asMatrix.o g++ -std=gnu++11 -shared -L/opt/R/4.2.1/lib64/R/lib -L/usr/local/lib64 -o SCP.so RcppExports.o asMatrix.o -L/opt/R/4.2.1/lib64/R/lib -lR installing to /home/yangwl/SCP_env/renv/staging/1/00LOCK-zhanghao-njmu-SCP-887a1bc/00new/SCP/libs R data * moving datasets to lazyload DB inst byte-compile and prepare package for lazy loading * help installing help indices * copying figures building package indices ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘SCP’: .onAttach failed in attachNamespace() for 'SCP', details: call: fun(libname, pkgname) error: object 'conda_info' not found Error: loading failed Execution halted ERROR: loading failed
• removing ‘/home/yangwl/SCP_env/renv/staging/1/SCP’ install of package 'SCP' failed [error code 1]

[ywl506803062]

devtools::session_info() ─ Session info ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── setting value version R version 4.2.1 (2022-06-23) os CentOS Linux 7 (Core) system x86_64, linux-gnu ui RStudio language (EN) collate en_US.UTF-8 ctype en_US.UTF-8 tz Asia/Shanghai date 2023-10-31 rstudio 2022.02.3+492 Prairie Trillium (server) pandoc NA

─ Packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── ! package * version date (UTC) lib source P BiocManager 1.30.22 2023-08-08 [?] CRAN (R 4.2.1) cachem 1.0.8 2023-05-01 [1] CRAN (R 4.2.1) P callr 3.7.3 2022-11-02 [?] CRAN (R 4.2.1) cli 3.6.1 2023-03-23 [1] CRAN (R 4.2.1) crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.1) P devtools 2.4.5 2022-10-11 [?] CRAN (R 4.2.1) digest 0.6.33 2023-07-07 [1] CRAN (R 4.2.1) ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.1) fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.2.1) fs 1.6.3 2023-07-20 [1] CRAN (R 4.2.1) P gitcreds 0.1.2 2022-09-08 [?] CRAN (R 4.2.1) glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.1) htmltools 0.5.6.1 2023-10-06 [1] CRAN (R 4.2.1) htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.2.1) httpuv 1.6.12 2023-10-23 [1] CRAN (R 4.2.1) later 1.3.1 2023-05-02 [1] CRAN (R 4.2.1) lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.2.1) magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.1) memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.1) mime 0.12 2021-09-28 [1] CRAN (R 4.2.1) miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.2.1) P pkgbuild 1.4.2 2023-06-26 [?] CRAN (R 4.2.1) P pkgload 1.3.3 2023-09-22 [?] CRAN (R 4.2.1) P prettyunits 1.2.0 2023-09-24 [?] CRAN (R 4.2.1) P processx 3.8.2 2023-06-30 [?] CRAN (R 4.2.1) P profvis 0.3.8 2023-05-02 [?] CRAN (R 4.2.1) promises 1.2.1 2023-08-10 [1] CRAN (R 4.2.1) P ps 1.7.5 2023-04-18 [?] CRAN (R 4.2.1) purrr 1.0.2 2023-08-10 [1] CRAN (R 4.2.1) R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.1) P Rcpp 1.0.11 2023-07-06 [?] CRAN (R 4.2.1) P remotes 2.4.2.1 2023-07-18 [?] CRAN (R 4.2.1) renv 1.0.3 2023-09-19 [1] CRAN (R 4.2.1) rlang 1.1.1 2023-04-28 [1] CRAN (R 4.2.1) P rstudioapi 0.15.0 2023-07-07 [?] CRAN (R 4.2.1) P sessioninfo 1.2.2 2021-12-06 [?] CRAN (R 4.2.1) shiny 1.7.5.1 2023-10-14 [1] CRAN (R 4.2.1) P stringi 1.7.12 2023-01-11 [?] CRAN (R 4.2.1) stringr 1.5.0 2022-12-02 [1] CRAN (R 4.2.1) P urlchecker 1.0.1 2021-11-30 [?] CRAN (R 4.2.1) P usethis 2.2.2 2023-07-06 [?] CRAN (R 4.2.1) vctrs 0.6.4 2023-10-12 [1] CRAN (R 4.2.1) xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.1)