zhanghao-njmu
commented
8 months ago Sorry, this is a bug in the check_R function. I have fixed this issue in the latest version of SCP. Please update to version 0.5.5 and note that SCP currently only supports Seurat V4 and SeuratObject V4. Do not update them when updating SCP, as compatibility with their v5 versions will be added in the future.
willey2020
Thank you for this great package! While I run the RunSCExplorer, it keeps showing checking shiny@1.6.0, however, I have already manually installed shiny with with 1.6.0. It seems that the R cannot recognize this "@1.6.0" maybe. Could you help to troubleshoot, thank you!
app <- RunSCExplorer(base_dir = "/home/R_env/SCP_env/SCExplorer2") Install package: "shiny@1.6.0" ... 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.14 (BiocManager 1.30.22), R 4.1.2 (2021-11-01) Installing package(s) 'shiny@1.6.0' Warning: package ‘shiny@1.6.0’ is not available for Bioconductor version '3.14'
A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packagesWarning: package ‘shiny@1.6.0’ is not available for this version of R
A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packagesError in check_R(c("rhdf5", "HDF5Array", "shiny@1.6.0", "ggplot2", "ragg", : Failed to install the package(s): shiny@1.6.0. Please install manually.