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zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
https://zhanghao-njmu.github.io/SCP/
GNU General Public License v3.0
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how to reduce run time for RunDynamicFeatures #234

Open nbutyrate opened 5 months ago

nbutyrate commented 5 months ago

Hi,

The following is running from past 12 hrs, but no success, is there any way to speed this up? thanks for your help in advance.

N <- DynamicPlot(

  • srt = ALL_B_yo_b_new_normal,
  • lineages = c("Lineage1", "Lineage1"),
  • features = c("PTGS1", "HPGDS"),
  • group.by = "CellType",
  • compare_lineages = TRUE,
  • compare_features = FALSE
  • ) [2024-04-11 21:05:29] Start RunDynamicFeatures Workers: 14 Number of candidate features(union): 2 Calculate dynamic features for Lineage1...