First, I must say I really enjoy the pipeline, function, and package. It really is quite nice, well-organized, and customizable. Thank you for all the time and effort you must put into this. With that said, I was wondering if there is a way to create a single volcano plot for my experiment and control T cells after RunDEtest?
When I do it this way, I get two plots split by status. I didn't see a way in code but was curious if I just missed something or if anyone had an easy work around to plot this into one volcano plot.
Hi,
First, I must say I really enjoy the pipeline, function, and package. It really is quite nice, well-organized, and customizable. Thank you for all the time and effort you must put into this. With that said, I was wondering if there is a way to create a single volcano plot for my experiment and control T cells after RunDEtest?
CD8T <- RunDEtest(srt = CD8T, group_by = "status", fc.threshold = 1)
VolcanoPlot(srt = CD8T, group_by = "status", nlabel = 10)
When I do it this way, I get two plots split by status. I didn't see a way in code but was curious if I just missed something or if anyone had an easy work around to plot this into one volcano plot.