Open Kiliankleemann opened 1 month ago
You can add a new assay without layer.
counts_data <- LayerData(object = obj, assay = "RNA", layer = "counts")
new_assay <- CreateAssayObject(counts = counts_data)
obj[["RNA1"]] <- new_assay
print(Assays(obj))
obj <- RunCellQC(srt = obj,assay = "RNA1")
It will work.
Xie Xie!
I get the following error: Error in RunCellQC(srt = dataset) : The db_rate is equal to or greater than 1!
My seurat object: Assay (v5) data with 20167 features for 109037 cells Top 10 variable features: S100a9, S100a8, Plp1, Ngp, Retnlg, Camp, Lcn2, Gzma, Ltf, Ccl5 Layers: data, counts, scale.data