zhanglab / psamm

Curation and analysis of metabolic models
https://zhanglab.github.io/psamm/
GNU General Public License v3.0
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Add command to operate on SBML files directly #230

Closed jonls closed 7 years ago

jonls commented 7 years ago

Add command psamm-sbml-model to run any command directly on an SBML file. Since this is using the SBMLReader in psamm.datasource.sbml it only supports the standardized SBML format and does not yet support alternative data such as COBRA-specific encodings of objective, flux bounds, gene associations etc. that are common in level 1 and 2 files.