zhanglab / psamm

Curation and analysis of metabolic models
https://zhanglab.github.io/psamm/
GNU General Public License v3.0
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By default, ignore boundary species in SBMLReader #237

Closed jonls closed 7 years ago

jonls commented 7 years ago

Changes SBMLReader to ignore boundary species by default. This fixes a bug where the psamm-sbml-model command would include the boundary species in the model when running commands. This also makes it easier to use SBMLReader for the typical tasks of loading SBML files and creating models using create_model().