Open YuChrming opened 2 years ago
@YuChrming, Your genome has too few differential kmers between subgenomes. It may be artifactual or natural. My suggestions (refer to the Supplementary Material):
-baseline -1
to compare the most and the least abundance of kmers.Thanks for your quick reply!
My Hi-C heatmap is not bad, at least in my opinion.
Then, I try
-baseline -1
but the error is still.
May it is highly homologous? But it should be an allotriploid evidenced by many literatures.
-overwrite
option?allo
?
Dear Writer ! Thanks for your useful pipline, but I meet an error when use SubPhaser. My command
But I have the error
What's wrong with me ?
subphaser -i groups_genome.fasta -c groups_sg.config
My configue file