What do these two parameters mean？

zhangwei2015 / IMonitor

This script use to analyze the immune repertoire sequenced by high throughtput sequencing

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What do these two parameters mean？ #11

Open fancity-xia opened 2 years ago

fancity-xia commented 2 years ago

java -jar -Xmx2G ./iMonitor/IMonitor-1.4.5/FqMerger.jar [0.9] [0.7]

zhangwei2015 commented 2 years ago

[0.9]: match ratio=the number of matched bases/the number of all bases (in the overlapping region between PE reads) [0.7]: the second-best match ratio/the best match ratio