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zhangyuqing / ComBat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data
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Install error #11

Closed zckoo007 closed 4 years ago

zckoo007 commented 4 years ago

devtools::install_github("zhangyuqing/sva-devel") Downloading GitHub repo zhangyuqing/sva-devel@master trying URL 'https://mirrors.tuna.tsinghua.edu.cn/CRAN/bin/windows/Rtools/Rtools35.exe' Content type 'application/octet-stream' length 108622512 bytes (103.6 MB) downloaded 40.5 MB

Error: Failed to install 'unknown package' from GitHub: Could not find tools necessary to compile a package Call pkgbuild::check_build_tools(debug = TRUE) to diagnose the problem. In addition: Warning message: In utils::download.file("https://mirrors.tuna.tsinghua.edu.cn/CRAN/bin/windows/Rtools/Rtools35.exe", : downloaded length 42446848 != reported length 108622512

zhangyuqing commented 4 years ago

Hi @zckoo007, this does not look like an issue with combat-seq. Instead, when using devtools, you need to install Rtools first, which looks like the problem you ran into. https://cran.r-project.org/bin/windows/Rtools/