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zhangyuqing / ComBat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data
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Using ComBat-Seq over RSEM estimated counts #23

Open ali-kishk opened 3 years ago

ali-kishk commented 3 years ago

Hi, I have 2 RNA-Seq studies on RSEM counts only. Would it a problem using the float RSEM counts as an input to ComBat-Seq? or Should I round them?

Thanks in advance!

kalavattam commented 1 year ago

This question is addressed here: https://www.biostars.org/p/472325/#472338