search

zhangzlab / covid_balf

R script for the covid balf data analysis
63 stars 35 forks source link

duplicate barcodes #15

Open dm8000 opened 3 years ago

dm8000 commented 3 years ago

Hello In the GSE page, there are cell annotation files such as the "GSM4385990_C141_filtered_contig_annotations.csv.gz" which have duplicate barcodes. How could I match these barcodes to the ones found in the .rds file annotations?

Additionally, it seems this file has a different number of labels compared with "GSM4339769_C141_filtered_feature_bc_matrix.h5". I assumed those were supposed to match. Were the meta.data added after integration and preprocessing?

zhangzlab commented 3 years ago

Please refer to cellranger vdj documentation (https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig.).

What does "a different number of labels" mean?