Open Shicheng-Guo opened 3 years ago
Hi Xiaowei,
vcf2kinship support bgen format as input or not?
The following parameters are available. Ones with "[]" are in effect: Available Options Input/Output: --inVcf [], --out [] Chromsome X Analysis --xHemi, --xLabel [], --xRegion [] Options: Algorithm: --ped [], --ibs, --bn, --pca, --storeGenotype Specify Genotype: --dosage [] People Filter: --peopleIncludeID [], --peopleIncludeFile [] --peopleExcludeID [], --peopleExcludeFile [] Range Filter: --rangeList [], --rangeFile [] Site Filter: --minMAF [], --maxMiss [], --minSiteQual [], --anno [] Genotype Filter: --minGQ [], --minGD [] Other Function: --update-id [], --thread [], --help Effective Options [INFO] Program version: 20170307 [INFO] Analysis started at: Fri Oct 30 22:36:37 2020 [ERROR] Please provide input file using: --inVcf or --ped
Thanks.
Shicheng
Hi Xiaowei,
vcf2kinship support bgen format as input or not?
Thanks.
Shicheng