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zhanxw / rvtests

Rare variant test software for next generation sequencing data
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Meta analysis tests for burden units #116

Open aschluter opened 3 years ago

aschluter commented 3 years ago

Hi everyone,

I am interested in running dominant and recessive meta-analysis tests for burden units instead of single variant but I get only single variant probability values. Is it possible?

./executable/rvtest \ --inVcf data.vcf\ --pheno data.ped \ --meta dominant \ --out output \ --covar PCA.covar \ --covar-name sex,PC1,PC2,PC3 \ --setFile Pathways.set \ --set pathway

thanks in advance,

Agatha