dajiangliu
commented
2 years ago VCF is following 1-based, and we are following that. Thanks!
All the best, Dajiang
Associate Professor Co-Chair, Bioinformatics and Genomics Graduate Program Dept. Public Health Sciences Institute of Personalized Medicine Penn State College of Medicine, ASB 4301C Email: @.*** URL: https://dajiangliu.blog https://dajiangliu.blog Tel: +1-717-531-4178
On Mon, Jan 17, 2022 at 12:24 PM Pierre Lindenbaum @.***> wrote:
Hi, thank your for writing rvtests.
A quick question: if the setFile format
- half-closed 0-based like bed ?
- or open 1-based like gtf/gff ?
?
thank you.
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Hi, thank your for writing rvtests.
A quick question: if the
setFileformatAnd in the refFlat format: do you only consider the exons or the whole transcript (including introns) ?
thank you.