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zhanxw / rvtests

Rare variant test software for next generation sequencing data
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could not specify multiple phenotypes. #39

Open jielab opened 7 years ago

jielab commented 7 years ago

Hi, RVTESTS allow "--covar-name cov1,cov2,cov3", but I found that I could not use "--pheno-name trait1,trait2,trait3". It gave me an ERROR : cannot locate phenotype header [trait1,trait2,trai3].

I did see the "--multiplePheno" option. I tried it and it did not work either. So, can you please let me know how i could specify multiple phenotypes to run at the same command?

Thank you very much!

Jie

zhanxw commented 7 years ago

Hi Jie,

This is an experimental feature, and we have not thoroughly tested it. We do plan to provide documentation and example datasets.

Xiaowei

On Sep 13, 2017, at 11:12 PM, jiehuang001 notifications@github.com wrote:

Hi, RVTESTS allow "--covar-name cov1,cov2,cov3", but I found that I could not use "--pheno-name trait1,trait2,trait3". It gave me an ERROR : cannot locate phenotype header [trait1,trait2,trai3].

I did see the "--multiplePheno" option. I tried it and it did not work either. So, can you please let me know how i could specify multiple phenotypes to run at the same command?

Thank you very much!

Jie

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jielab commented 7 years ago

so, currently there is NO way to test multiple phenotypes in one command?

zhanxw commented 6 years ago

You're right. Since this is an experimental feature, we don't want to waste your efforts. @dajiangliu and I are working on it now, and report back on this issue.