What is the file format of gene range file?

zhanxw / rvtests

Rare variant test software for next generation sequencing data

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What is the file format of gene range file? #40

Closed TimingSpace closed 7 years ago

TimingSpace commented 7 years ago

I use the range file FLG NM_002016 chr1 152276780 155000000

But I got the following message: [INFO] Loaded [ 2 ] genes. [INFO] Impute missing genotype to mean (by default) [INFO] Analysis started [INFO] Gene FLG has 0 variants, skipping

Is there any mistake in my range file?

Besides, I try to modify vcf2ld_gene.cpp file to print more information, but after compiling, the output doesn't change.

If I want to print out more information, what I should do?

zhanxw commented 7 years ago

Please refer to: https://github.com/zhanxw/rvtests#specify-groups-eg-burden-unit