--rangeList is not subsetting for skato

zhanxw / rvtests

Rare variant test software for next generation sequencing data

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--rangeList is not subsetting for skato #62

Open zx8754 opened 5 years ago

zx8754 commented 5 years ago

Trying to run burden test on subset of vcf as below:

rvtest --inVcf ... \
--noweb \
--pheno ... \
--covar ... \
--rangeList 21:1-11500000 \ # <--- here
--geneFile refFlat_hg19.txt.gz \
--kernel skato \
--out ...

But the output keeps giving results for all the chromosomes and all the genes. Any idea why?

zhanxw commented 5 years ago

Looks like a bug. I will check that.