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zhanxw / rvtests

Rare variant test software for next generation sequencing data
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Filter output: --pfilter #66

Open zx8754 opened 5 years ago

zx8754 commented 5 years ago

Similar to plink: --pfilter [threshold].

https://www.cog-genomics.org/plink/1.9/assoc

--pfilter causes only associations with p-values no larger than the given threshold to be reported.

zhanxw commented 5 years ago

This looks like a good feature. But my concern is that some test outputs two p-values, one for analytic p-value, the other for permutation p-value. Maybe I should report if any of the p-values is no larger than the threshold. @dajiangliu