Add phenotype sample filter "--keep"

zhanxw / rvtests

Rare variant test software for next generation sequencing data

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Add phenotype sample filter "--keep" #71

Closed zx8754 closed 5 years ago

zx8754 commented 5 years ago

Similar to plink implement --keep filter.

--keep accepts a space/tab-delimited text file with family IDs in the first column and within-family IDs in the second column, and removes all unlisted samples from the current analysis. --remove does the same for all listed samples.

zhanxw commented 5 years ago

Will the option --peopleIncludeFile be helpful?

More on this: https://github.com/zhanxw/rvtests#sample-inclusionexclusion